{ "_id": "6a1f0b70b401979e7341c76f", "Package": "lpjmlkit", "Type": "Package", "Title": "Toolkit for Basic LPJmL Handling", "Version": "1.8.1", "Authors@R": "c(\nperson(\"Jannes\", \"Breier\", , \"jannesbr@pik-potsdam.de\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-9055-6904\")),\nperson(\"Sebastian\",\"Ostberg\", , \"ostberg@pik-potsdam.de\", role = \"aut\", comment = c(ORCID = \"0000-0002-2368-7015\")),\nperson(\"Stephen Björn\", \"Wirth\", , \"wirth@pik-potsdam.de\", role = \"aut\", comment = c(ORCID = \"0000-0003-3090-3318\")),\nperson(\"Sara\",\"Minoli\", , \"minoli@pik-potsdam.de\", role = \"aut\", comment = c(ORCID = \"0000-0001-7920-3107\")),\nperson(\"Fabian\", \"Stenzel\", , \"stenzel@pik-potsdam.de\", role = \"aut\", comment = c(ORCID = \"0000-0002-5109-0048\")),\nperson(\"David\",\"Hötten\", , \"davidho@pik-potsdam.de\", role = c(\"aut\")),\nperson(\"Christoph\", \"Müller\", , \"cmueller@pik-potsdam.de\", role = \"aut\", comment = c(ORCID = \"0000-0002-9491-3550\"))\n)", "Description": "A collection of basic functions to facilitate the work\nwith the Dynamic Global Vegetation Model (DGVM)\nLund-Potsdam-Jena managed Land (LPJmL) hosted at the Potsdam\nInstitute for Climate Impact Research (PIK). It provides\nfunctions for performing LPJmL simulations, as well as reading,\nprocessing and writing model-related data such as inputs and\noutputs or configuration files.", "License": "AGPL-3", "RoxygenNote": "7.3.3", "Roxygen": "list(markdown = TRUE, r6 = TRUE)", "Encoding": "UTF-8", "URL": "https://github.com/PIK-LPJmL/lpjmlkit,\nhttps://doi.org/10.5281/zenodo.7773134", "BugReports": "https://github.com/PIK-LPJmL/lpjmlkit/issues", "Config/testthat/edition": "3", "VignetteBuilder": "knitr", "Date": "2026-03-10", "Config/pak/sysreqs": "libicu-dev", "Repository": "https://pik-piam.r-universe.dev", "Date/Publication": "2026-04-14 07:23:04 UTC", "RemoteUrl": "https://github.com/PIK-LPJmL/lpjmlkit", "RemoteRef": "HEAD", "RemoteSha": "5c693a9074690535b13d40691c7583c84118622a", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-17 09:52:26 UTC", "User": "root" }, "Author": "Jannes Breier [aut, cre] (ORCID:\n),\nSebastian Ostberg [aut] (ORCID:\n),\nStephen Björn Wirth [aut] (ORCID:\n),\nSara Minoli [aut] (ORCID: ),\nFabian Stenzel [aut] (ORCID: ),\nDavid Hötten [aut],\nChristoph Müller [aut] (ORCID: )", "Maintainer": "Jannes Breier ", "MD5sum": "50557edef7956575e30ec18d428ec690", "_user": "pik-piam", "_type": "src", "_file": "lpjmlkit_1.8.1.tar.gz", "_fileid": "fa7ebf75b5ece907d8b02459605d3ebb37e94f4f805cbb98de0e2710f2765c10", "_filesize": 581135, "_sha256": "fa7ebf75b5ece907d8b02459605d3ebb37e94f4f805cbb98de0e2710f2765c10", "_created": "2026-05-17T09:52:26.000Z", "_published": "2026-06-02T16:57:20.707Z", "_distro": "noble", "_jobs": [ { "job": 79126102785, "time": 173, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7041405484" }, { "job": 79126103441, "time": 162, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7041404325" }, { "job": 79126102623, "time": 113, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7041414667" }, { "job": 79126102992, "time": 140, "config": 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branch 'fix_cdf_format_check' into 'master'\n\nFix failure of initialize() of Metadata if .format is NULL\n\nSee merge request lpjml/lpjmlkit!113", "time": 1776151384 }, "_maintainer": { "name": "Jannes Breier", "email": "jannesbr@pik-potsdam.de", "login": "jnnsbrr", "orcid": "0000-0002-9055-6904", "description": "", "uuid": 57749050 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.1.0", "role": "Depends" }, { "package": "magrittr", "role": "Imports" }, { "package": "dplyr", "role": "Imports" }, { "package": "processx", "role": "Imports" }, { "package": "tibble", "role": "Imports" }, { "package": "jsonlite", "role": "Imports" }, { "package": "doParallel", "role": "Imports" }, { "package": "foreach", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "abind", "role": "Imports" }, { "package": "rlang", "role": "Imports" }, { "package": "withr", "role": "Imports" }, { "package": 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"as_array", "as_header", "as_list", "as_raster", "as_terra", "asub", "calc_cellarea", "check_config", "create_header", "detect_io_type", "find_varfile", "get_cellindex", "get_datatype", "get_header_item", "get_headersize", "LPJmLData", "LPJmLGridData", "LPJmLMetaData", "make_lpjml", "plot.LPJmLData", "read_config", "read_grid", "read_header", "read_io", "read_meta", "run_lpjml", "set_header_item", "split_time_names", "submit_lpjml", "subset.LPJmLData", "transform", "write_config", "write_header" ], "_help": [ { "page": "lpjmlkit-package", "title": "lpjmlkit: Toolkit for Basic LPJmL Handling", "topics": [ "lpjmlkit-package", "lpjmlkit" ] }, { "page": "add_grid", "title": "Add grid to an LPJmLData object", "topics": [ "add_grid" ] }, { "page": "as_array", "title": "Coerce an LPJmLData object to an array", "topics": [ "as_array" ] }, { "page": "as_header", "title": "Coerce LPJmLMetaData to an LPJmL header object", "topics": [ "as_header" ] }, { "page": "as_list", "title": "Coerce LPJmLMetaData to a list", "topics": [ "as_list" ] }, { "page": "as_raster", "title": "Coerce an LPJmLData object to a raster object", "topics": [ "as_raster" ] }, { "page": "as_terra", "title": "Coerce an LPJmLData object to a terra object", "topics": [ "as_rast", "as_SpatRaster", "as_terra" ] }, { "page": "as_tibble.LPJmLData", "title": "Coerce an LPJmLData object to a tibble", "topics": [ "as_tibble.LPJmLData" ] }, { "page": "asub", "title": "Subset a named array", "topics": [ "asub" ] }, { "page": "calc_cellarea", "title": "Calculate the cell area of LPJmL cells", "topics": [ "calc_cellarea" ] }, { "page": "check_config", "title": "Check the validity of LPJmL config JSON files", "topics": [ "check_config" ] }, { "page": "create_header", "title": "Create a new LPJmL input/output file header", "topics": [ "create_header" ] }, { "page": "detect_io_type", "title": "Detect the file type of an LPJmL input/output file", "topics": [ "detect_io_type" ] }, { "page": "dim.LPJmLData", "title": "Dimensions of an LPJmLData data array", "topics": [ "dim.LPJmLData" ] }, { "page": "dimnames.LPJmLData", "title": "Dimnames of an LPJmLData data array", "topics": [ "dimnames.LPJmLData" ] }, { "page": "find_varfile", "title": "Search for a variable file in a directory", "topics": [ "find_varfile" ] }, { "page": "get_cellindex", "title": "Get Cell Index", "topics": [ "get_cellindex" ] }, { "page": "get_datatype", "title": "Data type of an LPJmL input/output file", "topics": [ "get_datatype" ] }, { "page": "get_header_item", "title": "Retrieve information from an LPJmL input/output file header", "topics": [ "get_header_item" ] }, { "page": "get_headersize", "title": "Determine the size of an LPJmL input/output file header", "topics": [ "get_headersize" ] }, { "page": "length.LPJmLData", "title": "Length of an LPJmLData data array", "topics": [ "length.LPJmLData" ] }, { "page": "LPJmLData", "title": "LPJmL data class", "topics": [ "LPJmLData" ] }, { "page": "LPJmLGridData", "title": "LPJmL grid data class", "topics": [ "LPJmLGridData" ] }, { "page": "LPJmLMetaData", "title": "LPJmL meta data class", "topics": [ "LPJmLMetaData" ] }, { "page": "make_lpjml", "title": "Compile LPJmL model", "topics": [ "make_lpjml" ] }, { "page": "plot.LPJmLData", "title": "Plot an LPJmLData object", "topics": [ "plot.LPJmLData" ] }, { "page": "read_cdf", "title": "Reads netcdf and returns it as array", "topics": [ "read_cdf" ] }, { "page": "read_cdf_meta", "title": "Reads netcdf and returns it header info", "topics": [ "read_cdf_meta" ] }, { "page": "read_config", "title": "Read an LPJmL configuration file", "topics": [ "read_config" ] }, { "page": "read_grid", "title": "Read LPJmL input and output grid files", "topics": [ "read_grid" ] }, { "page": "read_header", "title": "Read header (any version) from LPJmL input/output file", "topics": [ "read_header" ] }, { "page": "read_io", "title": "Read LPJmL input and output files", "topics": [ "read_input", "read_io", "read_output" ] }, { "page": "read_meta", "title": "Read an LPJmL meta file, NetCDF or binary file header", "topics": [ "read_meta" ] }, { "page": "run_lpjml", "title": "Run LPJmL model", "topics": [ "run_lpjml" ] }, { "page": "set_header_item", "title": "Set information in an LPJmL input (or output) file header", "topics": [ "set_header_item" ] }, { "page": "split_time_names", "title": "Split date strings into years, months and days", "topics": [ "split_time_names" ] }, { "page": "submit_lpjml", "title": "Submit LPJmL model simulation to SLURM", "topics": [ "submit_lpjml" ] }, { "page": "subset.LPJmLData", "title": "Subset an LPJmLData object", "topics": [ "subset.LPJmLData" ] }, { "page": "summary.LPJmLData", "title": "LPJmLData object summary", "topics": [ "summary.LPJmLData" ] }, { "page": "transform", "title": "Transform an LPJmLData object", "topics": [ "transform" ] }, { "page": "write_config", "title": "Write LPJmL config files (JSON)", "topics": [ "write_config" ] }, { "page": "write_header", 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Example Global Trend in net primary productivity (NPP) over the years", "2. Example Runoff in northern hemisphere during summertime", "3. Example Gross primary productivity (GPP) per latitude", "4. 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