Package 'mrorganic'

Title: Provide soil organic carbon and biomass data
Description: mrorganic supports downloading and preparing soil organic carbon and biomass data for further scientific work.
Authors: Jan Philipp Dietrich [aut, cre], Pascal Führlich [aut], Hugo Valin [ctb]
Maintainer: Jan Philipp Dietrich <[email protected]>
License: LGPL-3 | file LICENSE
Version: 0.5.6
Built: 2024-10-24 03:13:27 UTC
Source: https://github.com/tscheypidi/mrorganic

Help Index

mrorganic: Provide soil organic carbon and biomass data

Description

mrorganic supports downloading and preparing soil organic carbon and biomass data for further scientific work.

Author(s)

Maintainer: Jan Philipp Dietrich [email protected]

Authors:

Other contributors:

  • Hugo Valin [contributor]

See Also

Useful links:

Calculate Biomass by land type

Description

Estimate soil organic carbon content split by land type.

Usage

calcBiomassByLandType(subtype)

Arguments

subtype

"aboveground" or "belowground"

Value

data

Author(s)

Jan Philipp Dietrich

See Also

calcOutput

Examples

## Not run: 
a <- calcOutput("BiomassbyLandType", subtype = "aboveground")

## End(Not run)

calcEcoregions2017Raster

Description

Produces a raster with ecoregion information.

Usage

calcEcoregions2017Raster(nrows = 720, ncols = 1440)

Arguments

nrows

Number of rows in the raster produced.
ncols

Number of columns in the raster produced.

Value

A raster with ecoregion information as a data.frame

Author(s)

Pascal Führlich

Calculate land type areas

Description

Convert ESACCI landcover information into area information for selected land types cropland, grassland and other.

Usage

calcLandTypeAreas(categories = "CropGrassOther")

Arguments

categories

Categories land should be segregated into. Only available options are currently "CropGrassOther" and "CropGrassForestOthernatvegResidual".

Value

data

Author(s)

Jan Philipp Dietrich

See Also

calcOutput

Examples

## Not run: 
a <- calcOutput("LandTypeAreas")

## End(Not run)

Aggregate land type areas

Description

Aggregate land type area information to a desired resolution

Usage

calcLandTypeAreasAggregated(res, zeroValue = 0)

Arguments

res

target resolution
zeroValue

value for cells with no area. Useful to change to a very small number if the area information should be used as weight.

Value

data

Author(s)

Jan Philipp Dietrich

See Also

calcOutput

Examples

## Not run: 
a <- calcOutput("LandTypeAreas")

## End(Not run)

Calculate SOC by land type

Description

Estimate soil organic carbon content split by land type

Usage

calcSOCbyLandType()

Value

data

Author(s)

Jan Philipp Dietrich

See Also

calcOutput

Examples

## Not run: 
a <- calcOutput("SOCbyLandType")

## End(Not run)

Calculate world countries

Description

Partition the world into countries with their respective ISO codes

Usage

calcWorldCountries()

Value

data

Author(s)

Patrick v. Jeetze, Jan Philipp Dietrich

See Also

calcOutput

Examples

## Not run: 
a <- calcOutput("WorldCountries", aggregate = FALSE)

## End(Not run)

fullORGANIC

Description

Bundle function for mrorganic which bundles all relevant outputs and write them to a tgz file.

Usage

fullORGANIC(rev)

Arguments

rev

data revision

Details

Use regionmapping = "regionmappingGTAP11.csv") to produce outputs for GTAP11 world regions.

Author(s)

Jan Philipp Dietrich

See Also

retrieveData, calcOutput, readSource, setConfig

Examples

## Not run: 
retrieveData("Organic", rev = 2.1, regionmapping = "regionmappingGTAP11.csv")

## End(Not run)

plotMap

Description

Create a plot showing a map.

Usage

plotMap(x, name, createPng = FALSE, range = NULL, ...)

Arguments

x

The data to plot as magclass object
name

The name/title of the plot/png
createPng

If TRUE save plot as png
range

range of values for the color bar. If NULL range will be detected automatically
...

Further arguments passed to terra::plot

Read ESACCI

Description

Read ESACCI data

Usage

readESACCI(subtype = "landcover2010")

Arguments

subtype

Subtype to be read in

Value

data

Author(s)

Jan Philipp Dietrich

See Also

readSource

Examples

## Not run: 
a <- readSource("ESACCI")

## End(Not run)

Read GSOCseq

Description

Read GSOCseq data

Usage

readGSOCseq(subtype = "ini")

Arguments

subtype

data set to use (currently available "ini" and "finalSSM1")

Value

data

Author(s)

Jan Philipp Dietrich

See Also

readSource

Examples

## Not run: 
a <- readSource("GSOCseq")

## End(Not run)

Read Spawn

Description

Read Spawn data

Usage

readSpawn(subtype)

Arguments

subtype

Subtype to be read in. Available types are "abovegroundBiomass", "abovegroundBiomassUncertainty", "belowgroundBiomass" and "belowgroundBiomassUncertainty".

Value

data

Author(s)

Jan Philipp Dietrich

See Also

readSource

Examples

## Not run: 
a <- readSource("Spawn", "abovegroundBiomass")

## End(Not run)

readWorldBankMaps

Description

Read World Bank Maps

Usage

readWorldBankMaps(subtype = "CountryPolygons")

Arguments

subtype

data set to use (currently available "CountryPolygons", "CountryBoundaries", "DisputedAreas" and "DisputedAreasBoundaries")

Value

data

Author(s)

Jan Philipp Dietrich

See Also

readSource

Examples

## Not run: 
a <- readSource("WorldBankMaps")

## End(Not run)

toolAddEcoregions

Description

Enriches a magclass object with ecoregion and region information.

Usage

toolAddEcoregions(x, ecoregions, regionmapping)

Arguments

x

A magclass object
ecoregions

Ecoregions dataframe, as returned by calcEcoregions2017Raster
regionmapping

A regionmapping

Value

x with additional ecoregion and region information. Spatial subdimensions: c("x", "y", "country", "region", "biome", "country_biome", "region_biome")

Author(s)

Pascal Führlich

toolAggregateByLandType

Description

Aggregate raster object by land type and return as 0.25degx0.25deg magclass object

Usage

toolAggregateByLandType(x, weight)

Arguments

x

data to be aggregated
weight

weight to be used for aggregation (land type)

Value

data

Author(s)

Jan Philipp Dietrich

See Also

calcOutput